NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211734_11145647

Scaffold Ga0211734_11145647


Overview

Basic Information
Taxon OID3300020159 Open in IMG/M
Scaffold IDGa0211734_11145647 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1611
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003541Metagenome / Metatranscriptome480Y
F007116Metagenome / Metatranscriptome357Y
F023791Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0211734_111456471F023791N/ATFTMTVNAYLLPEQFNKVPVVKKEYSKKRIVFGVETDLSGNLFNSPSVYNEYAQVIDFVAIRGSQMATFVNTNTVKLTNVKKPLLPSELIGIFDTDNWFRVYINGEFISPTFYTYSYNGVTKEIVFTFSLTYPLDANDEIAITGKFQEL
Ga0211734_111456473F007116N/AMGRRIPNINIDTTQKFRDRAGFKQFVLQVNTDTFIYSYFPNAIELNEDKTLFTLTLLNKKFIVDILELDNVKDYIDVYLFGVKQPQDRYTVEADGTDIVINFIVDITRIPEDVSATNFEIKGKIAEIL
Ga0211734_111456474F003541AGCAGMARLIPRKQIEEQQNISSSLNIGENVYVGQDAIISGSLFVSQSFFFGNDTGSKNEITGSVFLTGSLVIAGELRTAAPNTILSVTSSNALVSVDTQRYAGILAKDFGANLPTLYVSSTDGDDTNDGRSIQYPLRTIKRA
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