NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10122369

Scaffold Ga0211733_10122369


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10122369 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1683
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023329Metagenome / Metatranscriptome210N
F031460Metagenome / Metatranscriptome182Y
F084152Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_101223693F084152AGGAGGMLTMDEYKVVDRILVNYLEVGDLIKIKDEVFQVINLLDTPKGWDIIVLDNYDETKTISVPDGSYLKIVMIDTFED
Ga0211733_101223695F031460AGGAGGMAKYVESIEVSLQMWANVSLSAEEIADIYPAFNDMTAGDDTDELESAIEEYMNMNYMDHVQYSDGALDECRIDVVWEDDGSE
Ga0211733_101223696F023329N/ASRTSNRVGATSMVEETQDKDKELAQLQSFFKYNISTDEILSGRLKILMADLSWQMDLPTWTKEELDIMCAKMDALVEVSNLLYDIQWHRLNWERKQSD
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