NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_10440476

Scaffold Ga0211733_10440476


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_10440476 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6753
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F003182Metagenome / Metatranscriptome502Y
F009883Metagenome / Metatranscriptome311Y

Sequences

Protein IDFamilyRBSSequence
Ga0211733_104404765F003182AGGAGMHILQFDCSICKKLYGKPKQRHGLKKGAELTAHEWFAQCMGCGTFGIKIVDDSRIEELSQ
Ga0211733_104404766F000903N/AMITRIEEIQCMMAAIDHCKDREADHSSRIIRNLSWFEFVSQNAESMVSEWTVAKALGYDYTPGMTWDKNQADVGDHIEVKWSANPHSNLWIQESDRHDRDIAVLVTGNSPKMHIVGWIPVAIAKKPRYRNASQNNWSVPQINLQPIETLQRSNYAHPSI
Ga0211733_104404767F000403AGGAMQTNMVCDDKPRQMGATSMSDYVEILNPQTMTGRLYFEGEVIEEYKIDQCDKCSKLTKFDPFGYQIGYNKTEKIIWFCGDCR
Ga0211733_104404769F009883GGAGMNEISIVIFMIIAGAFWAVMCYAVGFKEGQRQGYTRGRAVSRHASQYDKAAK
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