Scaffold Ga0211733

Basic Information
Taxon OID	3300020160 Open in IMG/M
Scaffold ID	Ga0211733_11019907 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020160 Open in IMG/M

Scaffold ID

Ga0211733_11019907 Open in IMG/M

Source Dataset Name

Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

SciLifeLab

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16713
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

16713

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)	Depth (m)	0 to 10
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Erken, Sweden

Coordinates

Lat. (^o)

59.83763399

Long. (^o)

18.6203826

Alt. (m)

Depth (m)

0 to 10

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F042901	Metagenome / Metatranscriptome	157	Y
F065785	Metagenome / Metatranscriptome	127	Y
F066786	Metagenome / Metatranscriptome	126	N
F097357	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211733_1101990713	F042901	GGAGG	MARKPAVDKEIERVPEKPEGLLWLLKASEHEILERLHQDGALIYIHPALDGVVSYRIEENPQHDQKVVHVWR
Ga0211733_1101990718	F097357	N/A	VAQKILYNSVRHLKRHPRETDLTLDEFAEVAWAGEVWENQIVEIVKAVMSVLAKRTL
Ga0211733_1101990719	F033435	AGGA	LSNSIFDNIPKLEGRPNYVVDIERFIGAPGSFTFREPKASDLFPRPEVEKMLKIAFPEFPAQMLQILMIMARCYVTQPGDGEINPARRFAQLARDRSDIYLFVVGQFAAAFPINIEEAVDEVPND
Ga0211733_1101990721	F031872	AGGAG	MVESLVVDEWIYDTLTADSTLQGLLAVDNRAPNYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDGGQTDEQSLCGGRIVTTSSHQVWCWDTQSGAVSMARIKGIVDRIDTLLNKQSVNSTTPVFFLNRSSVSSSIDVSQDGRVDNGISQVYVATITP
Ga0211733_110199076	F065785	AGGA	MDTRNIKLTCIECHRTNAVPYGRGHRICGICSQRELKRERRKQTQRRIQTLGGFVLVVMCVWTACAMASDWNTPNSPDHRAHQAMSARD
Ga0211733_110199079	F066786	GGA	MTQERVDLTWRCGHTAHIMVGYTQSDLKYKMAMMTSTLKICAACENKLAIERSWSLTQRLLEPNPIVMTGSEKQIEWARSIRTTKYEALAHVLDCLREAYKTRQDEWPAIARAISPVVNDVSIWRSYTQSGAIIDRRNINWTGAFTNALSRAGLYIGGLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211733_11019907

Overview

Ecosystem & Geography

Associated Families

Sequences