NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211733_11195735

Scaffold Ga0211733_11195735


Overview

Basic Information
Taxon OID3300020160 Open in IMG/M
Scaffold IDGa0211733_11195735 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1414
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008546Metagenome / Metatranscriptome331Y
F042157Metagenome158N
F049410Metagenome146N

Sequences

Protein IDFamilyRBSSequence
Ga0211733_111957353F008546N/AMKQTAVEWWKLLIVFFSAIVLEANSIAGFRFLMDEHWLGMVMMVAINPFLCLPMNHYTIECKTFKQRVYIAISFSIGFVVGVLTIRPFFI
Ga0211733_111957355F049410GGAMTRGTRYTNGTEVITFVKIDFIAIGGRKIDHVYFRRKNKVDLIMPLLEWNLKGKFEWEIT
Ga0211733_111957356F042157N/AMKLKQKYHAPDNRQLKKIADYLIYVLLPFIQTSLALAETQGLITLKQAFWGGLAATFLLVNTKFLTKFTTE
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