NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10024015

Scaffold Ga0211726_10024015


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10024015 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1067
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016812Metagenome244Y
F034183Metagenome175Y
F043402Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_100240152F043402GAGMIDKFKELVENLDEKESDNLLIILSSLLESWEDNNINLYSEIRDFEITTIYKVLNLFHEQAEDAS
Ga0211726_100240153F034183AGGMNKLKTLAENINEEEAALIFQLLLSAFETANYQKVEYTHEDLQDESSLMINVELNTKNVPAEVIDKLLGFLK
Ga0211726_100240154F016812AGGAMNTLYPELIEEEDEATFASNLFKLYKLDERCGKLEAPSFRVLYLKDKKIQVHISNHFNSPTCIISYYNIKDKSCIDARTVSKKLYNKIHDHYFEVKKKIF
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