NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10030570

Scaffold Ga0211726_10030570


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10030570 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1632
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013644Metagenome / Metatranscriptome269Y
F060027Metagenome / Metatranscriptome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_100305701F060027N/AELDFNETMHNLIRTIMERGTILYQRIDNAATGRIDVSMERSGWTAATLQAAIRAMGDTVGVNSKSVSLSVVSQTELKLDNS
Ga0211726_100305704F013644AGGAMPITQNRSTDLTRRQAFNGKGLTFVEVILDADDIGSGTTPESLDSVFDKVTKVINKNGNLLAASYRLQAKATENDAAEAAGITEDEAIDSFQFIIEGTPGQFNAADSQGDTNIDVDATVIADAEVDIETDILAVI
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