NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10284653

Scaffold Ga0211726_10284653


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10284653 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2401
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003541Metagenome / Metatranscriptome480Y
F005742Metagenome / Metatranscriptome391Y
F007116Metagenome / Metatranscriptome357Y
F081345Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_102846531F081345N/ANVREDQLIAGRVESGDGQNFSVICSTFMTRRSAIQTEMRVI
Ga0211726_102846533F005742N/AMNIRQLKNIMKEINEPNEFELFIHDPEHPYYWIYKVDNVRVKTLFSRLEEFRKPSARFDVFINGLFISENDYIFEQNGNDFYVKFIKERFPVLDRFGNPYTLEDTDEVKIKGDVENIK
Ga0211726_102846534F007116N/AMRRTVPNINIDTTQKLRDRGAFKDFVLQVNTDTFTYSYTPNSIEVENEIYFTLTLVNKRFIFDILELDEVTDYIDVYLFGVKQPQDRYSARYENNNIIVTFTADITRLPNDVRTVDFEIKGKIAEIE
Ga0211726_102846535F003541AGCAGMARLIPRKQIEEQQNISGSLTVQQNVEVGSDVIISGSLFVSKSFFFGNETGSLNEITGSVFLTGSLTIDGNLKVGAPETVLSITSSNTILSEDTQRYAGILAKDFGANVPTLYVSSTDGDDTNDGRTIQFPLRTIKRAASLAAPGYDGRYGFDTGSIQ
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