NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10595206

Scaffold Ga0211726_10595206


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10595206 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15423
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (76.47%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000263Metagenome / Metatranscriptome1424Y
F001019Metagenome / Metatranscriptome804Y
F006846Metagenome / Metatranscriptome363Y
F021988Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_1059520617F006846N/AMMIEALVEKYLMRPRRLREAISAVVRENDELLCMLKEAENEEPTNLTWSEGDTWYGWTYNPEKKRYYFDDIGNKSIMGLWEDQWLREADDNNG
Ga0211726_105952062F000263AGGMNNEDIGLPPHLQRMVNSGVTGLDIMHGELKNLMLIAEEQLAWAVAVEKETEEAMDSMARTKAEGKLDTLVELYKLTYDLSFAIGEKEGQK
Ga0211726_1059520626F021988N/AMSNFQKEDGTGTTPPPNGAAAGAVTSNSATRKNPRQGLKTDINRHGIRRELNTTPRPPKRTGRKKI
Ga0211726_105952063F001019AGGMSYEPSLEILEMEYSCSPGGVDTFEVYDKTNILSVPLYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR
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