NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10628300

Scaffold Ga0211726_10628300


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10628300 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3982
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016812Metagenome244Y
F034183Metagenome175Y
F043402Metagenome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0211726_106283004F016812AGGAMSTLNPAMIEEEDEAVFSSNLFKLYKIDERCGKLEAPSFRVIYLKDKKTQIHVSNHFNSPTCIVTYYNIKDKTCIDARMISKRLYNKIADHYFEVKRSSF
Ga0211726_106283005F034183N/AMKDKILTLAQALNDEEAALLFQLLLKSFETANYQKVEYQNKDLVGEQSLMVNVELDLKNVPVDVINKLLGLLK
Ga0211726_106283006F043402N/AMKEKFLQLSDSLSEIESDNIITLLTNLLESWEDDRIDLCTTIQDFELTTIYKVLNLFTDERQDPNASTSSE
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