NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211726_10973190

Scaffold Ga0211726_10973190


Overview

Basic Information
Taxon OID3300020161 Open in IMG/M
Scaffold IDGa0211726_10973190 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8739
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (15.79%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)14 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011485Metagenome / Metatranscriptome290N
F016799Metagenome / Metatranscriptome244Y
F056337Metagenome / Metatranscriptome137N

Sequences

Protein IDFamilyRBSSequence
Ga0211726_109731902F016799N/AMRMLPLVRKYHPSIVDTDLDIYKVKNRVAAAPISPNPDPFQVTDKLGINKINDTKIRTVVYNSRGIFYII
Ga0211726_109731903F056337N/AMSDKYNNNSYDAVLSRMEQKLDTIAENIDNIKKGQKDLETRVSGLEYFKYYLAGIVAAVSVGANYLMNKVKNG
Ga0211726_109731904F011485N/AMIKSFKLFIVSVLASVAVFAADTESTVNASINAGYNNHYIVNGLAKTSGSAFAGFDIGKAYFGVDAYVGGVILPDSNSIDESHWKVGVGKALKITEKFSLRGDLQALRHQSSIVGGRNSTEVAPKIALVNPYLTPYIRGSHDFNLGQSGYIVGVERPTDVFGWFTLTPTVEYGKFTDYDVVAAKIGVSRTFFNHLQPYAEVGYYDNNFNASKYKFASQEFSGDLVAVAGVRWNF
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