NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10008971

Scaffold Ga0206125_10008971


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10008971 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7425
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017725Metagenome / Metatranscriptome239N
F041864Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100089713F041864N/AMKDSQDYILFKTIGLRYSPWMEDMENAPPSRMVVGNPNKLQEGTHRSFAIEFNNNIDRISKLIHFKHLSIHNLTLHYRKKSARNRKTQKVYPQHKMNLFFENTLELLTYLSSKNYKVDWIEIRFKNGWAIKNDFLNGLEFITNNTQERNLLLEKFISLSGQGPIDINSLEINKTYSLCTDGEVKLKPLFS
Ga0206125_100089715F017725N/AMNDFKINLSFENRLHLNKEAGTLAHVFGEGYFITDEYGREVNTLVQEKEFDRLIEKFKYRQLLIEKLNKELKDSFDFGEDNILLINGKRVAKRYWSIPKNEGEVDLYFKIISEEFNS
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