NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10009419

Scaffold Ga0206125_10009419


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10009419 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7140
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F006347Metagenome / Metatranscriptome375Y
F028003Metagenome / Metatranscriptome193Y
F059330Metagenome134N
F077798Metagenome117N
F081356Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1000941912F002747GGAGMAKDVRYFVDVCLEIYVPDQGCGEQALNNESKDANWFANEICNQIPKAINKNFKYSERPYSVNDATFVKQQRG
Ga0206125_1000941913F006347AGGAGMIEKIKNLIETLEQEINDGYNTLPDYETNNEGKTYINGAQATLYELQKQLETLEQGLRLGKNFSLLGEND
Ga0206125_100094192F077798N/AMTDISKKFKLIIENEEIFKSNPGAMTRLKHLVDTKKSFKHISKEEIEALYIYLMRHNLPQ
Ga0206125_100094195F081356GAGGMASVIEGKYKLVKDYTSIEGALYINEIVSVYDNNTRPGHMRAKDSMGRVWFIPQKYLKKIXCFLNLHYIYYXKN
Ga0206125_100094196F028003AGGMQVSQASGFDKYIIMCDKGQSKLTSDYLSYLKFKEVQNALVKISQTPGKTYMFGGEIHEKGMTCAQADRVLDDIFNCKTSMEMMSHIVRVARQIGFHEITPPRKIRWHQL
Ga0206125_100094199F059330N/AMTDKQIIEKTKNWLWELTEPNEKFGGFGICPFLKKELTNDDMKFIILRGQGFKSGLDNWIKENKYNSVLFICLGEIWEHIERKPYQKALQNTMKESGYKDYKALCFSPNEDKTAAGVKTRENAPYFLINIMDSKDLGKAHKKMIDTKYFDNFTKDELVDIKIYGKKTKKALDINEKN
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