NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10011182

Scaffold Ga0206125_10011182


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10011182 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6288
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F047926Metagenome / Metatranscriptome149N
F051114Metagenome144Y
F084220Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1001118210F051114N/AMRNKVIDKVLEENAKLFQQLGTDSTKAEVQAAKVQERKNLRAVRAENPELVGRLLNDGDK
Ga0206125_100111822F084220N/AMDYLSRELEEYQYRIDTTCEKCGESTDPDYYDCNCSDEEE
Ga0206125_100111823F009493N/AMRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKGQLGYNKRAPYNSFRVTAYVRYRYDLDNSIIAIKFTSDALKTLGWIKDDSPKYFRRLLLVWSEQIPKDEAQITIELSDENP
Ga0206125_100111826F047926N/AMYIEIAKNTWAYAKDEKDAERIRAKYKDYKKKQGDLISRHFIVNYIEETNFIK
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