NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10011697

Scaffold Ga0206125_10011697


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10011697 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6067
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000681Metagenome / Metatranscriptome939Y
F000724Metagenome / Metatranscriptome919Y
F003326Metagenome / Metatranscriptome494Y
F043675Metagenome / Metatranscriptome156Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100116971F043675GGAGMTNRINLVINLSILALLIYLSVAVKEIQGKVFPDPNIMQPAM
Ga0206125_1001169710F003326N/AMATLKQKKKLISTIKNPIRYFRLNFSRYGGEVAMGTITKDQYEYWSDNDGFEEYMGAVDFDADDANKEIPKRAQFDHPFYEYSDICHLSGPEWADSQTLYIEEIDKDGKPMDDGEGGYVADIQHDFGDLESLGALIKCTETHNSGSKSCKDHYYVFGQYFNKGGWHTPDIIKTGPDGIEIGKLTIEYTDADGFKVFNEIEYDGEVYYLEEDSTGKSSSFYVMEGDDV
Ga0206125_100116976F000724AGGAGGMPNKKQKIWMMGNKGPTGPWVWHAWIKGSKKPVRVVAFDMNHILCQLEGKQVIKANRLPDEKDEYSMMPLGPKGSIVNRPADYDKGFKILREWIDQNGGPPEEIRVKLRELYIDYDKAKQKTTTYSQKKKSWHKI
Ga0206125_100116979F000681AGGAGMYKRDQHYNEKISTENLYKELDTHYNGETDLVRNLMSMSITEGIVETRHELSCANEELWSLNDWPEDQGFQSSDRAEYIRRITETVASERKFLQVEDELVQINKLTECPNNDTVRKYMIMNEELRQGLTKGGQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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