Scaffold Ga0206125_10015808

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0206125_10015808

Scaffold Ga0206125_10015808

Overview

Basic Information
Taxon OID	3300020165 Open in IMG/M
Scaffold ID	Ga0206125_10015808 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4821
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (21.43%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012575	Metagenome	279	Y
F055560	Metagenome / Metatranscriptome	138	Y
F066795	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206125_1001580810	F012575	AGG	MSVTEYIDETAFVYRVVSDYKEVYIEWHMKDLPHLFTGRASSHEEKIEQYKSVLKELKKMRKPNQ
Ga0206125_100158087	F055560	N/A	MKKPTKQTSDIQEMFDSLKPSKKEQAIVWLVSPVIVLATWAVLIFICSL
Ga0206125_100158088	F066795	N/A	MNLSKTFPKMSTNDWRKLQLSTDAKNQRDWASRQLHDMESDPDNFTLRDYLKVRAGYNTAVETLKELQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.