NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10017455

Scaffold Ga0206125_10017455


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10017455 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4479
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004162Metagenome450Y
F007537Metagenome / Metatranscriptome349Y
F022462Metagenome / Metatranscriptome214Y
F062747Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100174553F004162N/AMTLKKSFNKVEGLLSTRRKIEKEIEEIQKLCQHPTKSIKNVRERLDSTAMVTRYVCDECSLIIGIPNNDELQNFLKQ
Ga0206125_100174555F062747N/AMENMNKKHKFKPGQGKTQKQYTDSTRFAWYGVVGMILLVILLTLLGGCATTHDTSKECCKTKKISTK
Ga0206125_100174556F022462N/AMRKYIRALEIPIYLLVIALACLERGDKGIAIFLIIISVFRLVVNVITDKAIYKR
Ga0206125_100174557F007537N/AMKKLLYLMVIGVIFTSCQKEEFEIERNYQFEMTGRTTQDINGYYYVKLNPQEDKQTLHRFGAYITNVDKYNLPTQVSWRCDAFWYTPDTLGHTYIEIGNVPTGESPWSWENFAVTGYGGMTVPIVNSTSFADPSVDSIFCMMAPIGAMIGDTVTIYGKAYFEEGDIKLYDNINVIFE
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