NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10021615

Scaffold Ga0206125_10021615


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10021615 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3815
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023845Metagenome208Y
F041145Metagenome160N
F059445Metagenome134Y
F098210Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100216151F098210N/AMVTLPLPNKITIGRENWVRMMYCMKHLMKLHPEYYDMIKPFYDQMYDKYPYNELDPFNFEDNYKVRPRTNIERELDKLADLNGKEKIETEQEFQSELNQLIWDLGMTLPSWDDNKDKE
Ga0206125_100216152F059445GGAGMNLNELVDSLIELSCHEMPEEARKSLDDAIDHIVSNMNDNQLKDVLGNTILDEIEAKHPKHVWKEEGDEEEIKAIKSLMDGNIAIA
Ga0206125_100216154F041145GAGGLSKPANISHSNLVKKLEMLVKLCEETEPTPKQLLKMSGEKKADVTDLFTPEMIDAKFYLQEVKAEDYDSYSVIDIMKGCNTIWRWRLKVKKEGWPDINGIEYICGEFLKKNQKIAAIKKYRQYMIDRGKDVGLKESKEWADKLSIKMGLTN
Ga0206125_100216155F023845AGAAGMSLLTYYKSTHDDIEKLIEDHVKECRRNIPWSGEHRMVVDKIINIFKRTH
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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