NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10022579

Scaffold Ga0206125_10022579


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10022579 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3699
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED198(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028003Metagenome / Metatranscriptome193Y
F059330Metagenome134N
F081356Metagenome / Metatranscriptome114N
F085559Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100225792F059330N/AMTNKQIIEQTKDWLWELTEPREEFSGFGICPFLKKELTNDDMKFVILKGQDLRNGLDDWILENKYNSILFICLSEVWEHIERKPYQKALQNLMKNNGYGNYKALCFSPNEDKTAAGVKTRENAPYFLINIMDSTDLGNAHKKMIDTKYFDNFTKDELVDIKIYGKNTKKALDINKKN
Ga0206125_100225794F085559AGGAGMTMSLQQTSDECGYALEAFGRVLKNNDIEAIEKAVGKPHIELVMEYQKEYRKIEVRNREIENEVNFNFIQSEKSEAVREWEQSWVDWVKSKLRFRRNES
Ga0206125_100225795F028003AGGMKVNQASGFDKYIIMCDKGQGKLVSDYPSYLKFKEVQNALVRISQTPGQTYMFGGEVHEKGMTCAQADRVLDDIFNCKTSMEMISLIRKVARQIGFHQMTVPGKIRWGL
Ga0206125_100225796F081356GGAMGIVNEGKYKLTQDYTSVEGALYENEIVQVYANNVKPGHLRAKDSMGRVWFIPKNYLKKI
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