NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10025164

Scaffold Ga0206125_10025164


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10025164 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3407
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002412Metagenome / Metatranscriptome561Y
F003169Metagenome / Metatranscriptome504Y
F004715Metagenome / Metatranscriptome427Y
F018084Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_1002516410F003169GGTGGMAMIKYPLYKKNNSRKITLVYPGLTTVSFDRIITYMPYYYVLAYQGKHCHRYYVQLDPESADVLHDVLVSRYDLVQVCAVPYSSVEPDIVISPAP
Ga0206125_100251645F004715AGGAMIYTDQEHQWLSKPAKKKRVSNQTADGSAPIEEDDRLWQRCWGIQTTIEVDGKKYTVPIQ
Ga0206125_100251647F018084N/AMNTALVIIALLVCPGIIMGMVSSYRAGQKPHRELYLILKKFAQRK
Ga0206125_100251649F002412N/AMLVRTVILYCIMTVCAVAFHENTFAVFELREELQMLYMNMWELLHQLEYVTADQRPVVYSDIEHIKSEIARVVNELIQHDRSQHP
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