NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206125_10029402

Scaffold Ga0206125_10029402


Overview

Basic Information
Taxon OID3300020165 Open in IMG/M
Scaffold IDGa0206125_10029402 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3030
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019821Metagenome227N
F021526Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0206125_100294027F019821AGGAMTINNKTTVQELIDLEVFSAADIEKLNKKLQRSADRAARKALVEGTMSDIKALLESEAHEGNRYWSPKKASHSLGFMTYIEADRDTILKALTKLTDEGYLTKVGLKKVDGKLTELDTTQVNPFHLRYIVTPVEEADAAVDEEGS
Ga0206125_100294028F021526GGAGMRYFSIDYRSPPSGMGQIIDTTKPEKVGDQYNYILIDYGSDPHEDISYVMTKYFYSEQAEQEGWAGPVLPQIFQFLRDQKVTHVQDGELAYEYEGGNENDFHGLFTLDRWIEIMSAYL
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Institute for Fundamental Biomedical Research
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