Scaffold Ga0206128

Basic Information
Taxon OID	3300020166 Open in IMG/M
Scaffold ID	Ga0206128_1000789 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020166 Open in IMG/M

Scaffold ID

Ga0206128_1000789 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	34204
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (32.84%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

34204

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (32.84%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (37.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F010650	Metagenome / Metatranscriptome	301	Y
F012872	Metagenome / Metatranscriptome	276	Y
F013704	Metagenome / Metatranscriptome	269	Y
F016957	Metagenome / Metatranscriptome	243	N
F024891	Metagenome / Metatranscriptome	204	Y
F025860	Metagenome / Metatranscriptome	200	Y
F053302	Metagenome / Metatranscriptome	141	Y
F099890	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100078912	F010650	N/A	MKQFLRIANARLRRIYKNPQQRRAWAAKMYTRWLQRKQK
Ga0206128_100078924	F099890	N/A	MNLYDKLSPEALKVLDQEMIKFPYSTKALITGLKENRYCLDLTLNQCHRVAAVFGFECTLTNIINFFES
Ga0206128_100078930	F053302	N/A	MHLGFIIEQLQKVEATDQDLMIAKGEWKILTKWSEAKEQIRWRLRKK
Ga0206128_100078936	F024891	N/A	MIIVEENTTPQITMYLRDFTTESFEMEIISESERVEKVDTAISGSYDDFRKVLTFSYDVSALVAESFYVIKIWEVGKIKLLSQDKIYIIPSGSEVGTYQPKLATTEKTMDNEFKIYGE
Ga0206128_100078952	F025860	GAG	MNTENIYQIIDDLEAFADKVGSEWMKERLAMLEVHIINQSTK
Ga0206128_100078956	F012872	GAG	MDLHFEGNRLYYMEKEAELFKALDHLSKELSDQKTMTKEDMWEVFQILADSAAVYRHITDYFTTLDKLILDARIKNGKLKQEIYDLKKENHRLNEMLNREMDGF
Ga0206128_100078957	F013704	GAG	MDFKRKMNDGQRFEISGMEFICMETHAYFQTRLDDEESDIDVGSSYYIVRNTSTGRLHRIPFQKIIDKEKEITWKI
Ga0206128_100078961	F016957	N/A	MQLRKYLKEGRNLSDDRTAICVDVGKSGEALFKELTGAHKSSLADDKKHIDFYWGDMKVDVKGLKKMHHSGYILLEFINVWGGHGWCSKKSKAEYIAFQFPDAFYIFRKNHLRRRALDLCEEFDRSKILRKNWIPYQEAMYKWVGRYNAQDVFTYLKMEDVEDLIFEILPYKIKEG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206128_1000789

Overview

Ecosystem & Geography

Associated Families

Sequences