Scaffold Ga0206128

Basic Information
Taxon OID	3300020166 Open in IMG/M
Scaffold ID	Ga0206128_1001094 Open in IMG/M
Source Dataset Name	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020166 Open in IMG/M

Scaffold ID

Ga0206128_1001094 Open in IMG/M

Source Dataset Name

Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28605
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (28.89%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (25.00%)
Associated Families	12

Scaffold Components

Scaffold Length (bps)

28605

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (28.89%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (25.00%)

Associated Families

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Atlantic Ocean: North Sea, Helgoland
Coordinates	Lat. (^o)	54.1841	Long. (^o)	7.9	Alt. (m)	Depth (m)	1
Location on Map

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Source Dataset Sampling Location

Location Name

Atlantic Ocean: North Sea, Helgoland

Coordinates

Lat. (^o)

54.1841

Long. (^o)

7.9

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001668	Metagenome / Metatranscriptome	654	Y
F009330	Metagenome / Metatranscriptome	319	N
F009856	Metagenome / Metatranscriptome	312	Y
F014253	Metagenome / Metatranscriptome	264	N
F015079	Metagenome	257	Y
F024541	Metagenome / Metatranscriptome	205	N
F042877	Metagenome / Metatranscriptome	157	Y
F048232	Metagenome	148	N
F063638	Metagenome / Metatranscriptome	129	N
F063642	Metagenome	129	N
F072209	Metagenome	121	N
F091789	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0206128_100109410	F048232	N/A	MRTDITYEERVARIMFLREHRRNLLRDYCDETIPKREKNKLRLEIAKVQKALKKLDPDGMFPP
Ga0206128_100109411	F015079	N/A	MVQAQIESIQGKGDWKGRHGTMYTFEIAFNDGTVGEANSKSQEPPYKVGDEVYYEIKSDDQYGKKLKVSKSPPPPGGFQQFQPAKPNPDRDKQIIRGMCFKVAGMAWANQYKHKSFELPHQVMVKGVIALAKEYEQAFNEWMEE
Ga0206128_100109413	F063642	N/A	MEYTSTQLFDEVIQLATPDCIKRRDMTVIRKIKDLQNYTQRLEQIAEDAIATLKEKNA
Ga0206128_100109415	F091789	N/A	MIDWYNFHCRTWREAKRNWGHMMQDKGLQQINRDAPTGYGEAPHLITSKVEGFGFVIYPKGYDPREINHTLSSRASIYGNRYCGSLNSF
Ga0206128_100109416	F024541	N/A	MEFFDMIISQYGSVHKCAAKLGTNREQLLRQIRTGNDQVLNAIADNCRLSRQEVRWEFRYHTERMP
Ga0206128_100109419	F063638	AGG	MLDTLDTLTAVLDTVVTVVTDPIILDPMEPWYVTHYVELIFIVLAAAKAVLNLVPSEKPLVIFGYLDTLIGLIFKDRRK
Ga0206128_100109422	F001668	N/A	MATVYLPVQPIEGMDSAERAEALDAETWRLRRPLSLQSPQDVTKYYYPRITHPETGQVAIVGDTTEEVRISPEVDLTNMLALLPEVPQEEKDGLVMFIDANRGGTVAFGQLIPSTSTQLTEVEAEALGWLPDPIEP
Ga0206128_100109427	F014253	N/A	MILVFKNNSDSVSNTVYITPKEKRGAANVAEYGPTIQALGMELTSLTTNKAVMVNASTVTVTDRFTAFSFDADTVAADTSADLSGPQWPEGFIQYRIVERASSSDVRDITAADVILETGLGYLSRGAQTGILLTESGNSLAKEDGGLLLTEDATTTTEAYQETTYTSAADAAETFTYYE
Ga0206128_10010945	F009330	GGA	VTLDGYLSRNYDDLLQAAYRIAGKDGPDLLHEVILQLYQTKQDTIDGLLERDQMKYWVLRVMVNNYNSKTSRYHYKWRKDIERRRKFARHIVDWWDGDGVAAHRDELLTHIEERLADLPWFDAEVFAIYFEEGHTLDSFAEATGISRHKLYTTIRRVRKEIQGARRPDREADEGDGNR
Ga0206128_10010947	F042877	N/A	MIQGILVAIAILTFAQVGAEFYQEHQVRLFNLVVLLLACLALFV
Ga0206128_10010948	F072209	AGG	MVRAWFLAELGRLIKFVDATKTIQDNEELSETARALMEEFPAFKLEEFALVFEGIKRNKFGPMYGRLKLGELMECCRKWEETRAERILERKHRPEHDPYQRHSGTREERKAILVTVKDLIDLGQIKPPE
Ga0206128_10010949	F009856	N/A	MKYWFDTDDAQRWGLPAAAVLAHLKYWIERNTSAGEEPCMTQGIKEMAEYLPFLTPSKIKRALVKLEEVEAIYRKPNGFDRRHTYCLGTIPDHAWDETEPSISQNRTIDGPNLARVHIETNTSKRTKKDAREELEYQRPTEEEVIEYMEDRGAHELAPTLGPEFWNYYEANGWMVNGTPIAKWKPKVNQWINRERKNQSNDRRKGFNPAGFTPDGLKDFIANG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0206128_1001094

Overview

Ecosystem & Geography

Associated Families

Sequences