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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020166 Open in IMG/M |
| Scaffold ID | Ga0206128_1002778 Open in IMG/M |
| Source Dataset Name | Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15302 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (21.05%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Atlantic Ocean: North Sea, Helgoland | |||||||
| Coordinates | Lat. (o) | 54.1841 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F052885 | Metagenome / Metatranscriptome | 142 | N |
| F056904 | Metagenome / Metatranscriptome | 137 | N |
| F061979 | Metagenome / Metatranscriptome | 131 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206128_100277810 | F061979 | AGAAG | LERIFKKEQFNGMILNPFELSDTELDIQVRSGVLLEALGPEIWVYPNKYRPYLVRYILYLYDKGSELRRYFPDIAERKKVCAELAGFDLTNKVHQDKAEEFYVLAHKSSRLSMITFVKYQNNVIYGLYWSNIEHLWKLISDVSKQFKEFSNDKAYLEGQKIKSQMLELAEETLGRIKKHELELFQGDDLAKELTAKTRQGSFPEDVATLGDVY |
| Ga0206128_100277818 | F052885 | N/A | MRDSDYNNYPDWMKKPFTQKVVYTYADIKKDPDNPGRYIIPASYQFKLRDQIVVTDEDGTNQRPIHIAYSKGTNADGSLIIGYDLFFSEDNFGRIVLDPKRASDHSKFMFMEYSNMNGSNPNRDESVKIIWTKQDLEVKAKASRVDRKARKEAMLEAAQLSPYMVEVLIDVLGSSSDKEKSEEEQRDYIEDIAETDPKTFLAAVKSSLSEIISTTKKAKDLGIIKNDFKKQAFISQPDDEVIFSTKGLDKKKTYELFAKFLQENPKVLKTIESKVLMEQELV |
| Ga0206128_10027786 | F056904 | N/A | MKQPSSPYNYLAVKVDSLFDNEIKSRTLDLKIRTDLRPTHHTRIYGKVVALPRKYKDDVLPDGEVLWSSEGIEDFYFLGDKVYFHYNCVLDKGKQISDDTFLIPARRIFLRVECDNIIMSPGFSLGHKKYNDNVEEIELDGKKTMAEISEETGIVIDVFPKTMPNILVIDHSSKQERLGVMCHMLDDSNMEIEVEDNTYYLLEDRDIIGMYK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |