NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1003782

Scaffold Ga0206128_1003782


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1003782 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12317
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002542Metagenome / Metatranscriptome550Y
F030747Metagenome / Metatranscriptome184N
F091982Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_100378210F091982AGAAGGMSFRAFDLLKLVEDFGETLTLRKITTGGSYNPSTGSVVGSSTTDYSFTGYFYDYSSANPEEVIRGVRKCVVPYLGVGIDPFPDDLIIGNGDTVKVTRAVSIFSNGVAMCYICDVQE
Ga0206128_100378214F030747AGGAMDLMDLKPTSNTVEVKLKHPNTGVVLKNEDKTDMTIVVYATHSKEYKELMHEQTNKRLKDMQSSKKTDITAQEMEKATLDMLSKITSEWNITYNKEQPKLSIAKAKQLYDEVFWIKDQIEEALADSLDFTKA
Ga0206128_10037828F002542GGAGMHPSYLGWQVDWPVFIKMPISADNRDWKRGDHFNWLERGLHQDKVAILYASGYLYHNEELVVQTKVGDRLSEFSGKQLETLVNLLNSEVKSRTSSTAEFNTKKCKKSKIDDKQRGLIRRFLNNNRWITEDYYKIRDNILGE
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