NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1006305

Scaffold Ga0206128_1006305


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1006305 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8520
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (12.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002321Metagenome / Metatranscriptome571Y
F020543Metagenome / Metatranscriptome223Y
F051049Metagenome / Metatranscriptome144Y
F051863Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_100630518F051049N/AMTVAQALDRLEVSYIKFMQKNDYGDPGYVWWERIKDCQKWCNKEKTYVPMSDTQTLKIMREWVKNQKSFY
Ga0206128_100630521F020543N/AMKRYTLKVDNGDNIENIWSGNEMRDAIHYEDIAVKHWGRDAVWICNNMDEIAVG
Ga0206128_100630523F002321N/AMVLDLNKEMAWVTFLDNGWETKWHPVTNIAGQQLEWSDSIMDHCRAQFNDKDNWISFGIAPTSQMIIGNAVRDNM
Ga0206128_100630524F051863N/AMTKIEIINEIIVKKQEELKKVNAIGKKLEQTKVDAMFSVMQKYFEGEFTLDDVYINKPTGGYFSTSYEVKRPNKDYNYDKELMTIRFSEDWRTKEMDKIETSLHSTSDNSQWELERIFTNGEIAKVLLDHGDDLLAEMNVARLTNIKEIDAARTEIYKIESSISNLKSEINTIHINEAEEKLNGEGLVFGKEKKGAIDIKWDWTIRSINSAKIVSKTASGKSCNIEIQAYDYEPRVYEKVRMSNVAALLHQYRA
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