NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206128_1016726

Scaffold Ga0206128_1016726


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1016726 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4330
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F007892Metagenome / Metatranscriptome343Y
F019836Metagenome / Metatranscriptome227Y
F037230Metagenome / Metatranscriptome168Y
F045764Metagenome / Metatranscriptome152N
F051139Metagenome / Metatranscriptome144Y
F072257Metagenome / Metatranscriptome121Y
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_101672610F005129N/AMTYKVKIAEVNKSFSLSHHSYIDLGVFTVNASTYSFLYPAVKTDWACDINDTELEFLVNNKRCKYVGFKELYTQLYGNSFATFEADLIRQIEEEVAKNIIEEFPGTDVNF
Ga0206128_101672615F007892N/AMGRIIEISPQQDVVNKINAKADFTHNINRTRLERYTVSTQNVLKTANPSLFSKNTWQIVDEAFNSDHELLGGWLSEDDIYFLDYGLSVSDLKKAMKIAKFNKQLAIYDNVANKVIPVAD
Ga0206128_10167263F019836N/AMQKAELELPVKQFHRLYDLLGDLIDYEAEINVFNMESNDIEFLEDIRIELFNQIPDEKTYTDYAVTGRSSNPSIQAGKLYKITEKTSKHGFKLEVEDGEVIYCLFKNCAFLNGRDWTIINVEN
Ga0206128_10167264F045764N/AMKLTDEEIKEIADRMDDLMWEGFHDIVYDVYLQRENCFLDEEISDEDVIKVRKELKKYI
Ga0206128_10167265F037230N/AMKNLTEEYVEIDWSGICEDFDLDSGDISPEQSFEIDRALGNINEVLHKFIEQNKLKVHIGQTTLTNTEHNVLAVALDHMYEHLDDLVGELDTHEEENINLKRKDAVKSLKEMFNL
Ga0206128_10167267F051139N/AMQTAKLKLPVKQFHRLHDLLGDILDHEAETNDFNMDNSDVELMEDIRHELFNQIPDEKPIEITYAFTTASGTPNITPTKLYEVTLRDAGSGFLITNDAGREVFCIEKGCSHLSRLGSKNWNLITITND
Ga0206128_10167268F072257N/AMQELDRVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKKSWCVSDKGLTAFYKQMLYTFAYEQKNVPEHCFINSCMWAYHSAISSRDEHAEPCRRNTHCKR
Ga0206128_10167269F092077N/AMTKELSPLQRSFKRINELLPDSDQVLLRCDLYTMCTELTNKSFAEGINTKY
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.