NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1022048

Scaffold Ga0206128_1022048


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1022048 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3591
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007770Metagenome345Y
F016956Metagenome / Metatranscriptome243Y
F023615Metagenome / Metatranscriptome209Y
F039679Metagenome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0206128_10220483F023615AGGMNRFELEDAMSNLHQIGEDIETIIYAIGDSPIKHTEDQLLNMLIGMKQLDDTRYQKMWDTFEQLIKNGTISDKNTEEL
Ga0206128_10220484F016956AGCAGMEQYQIKIQKNYKMIETYEVWKAPKKAQLAIIDLAITHIKKVESNPDVETEGDNFDYWNSYELEDGTFVDYNIHCGDEWTRLKQDGSGEYEYTDPSTWSWDVACYAVNPPTEEFQYHSIDTDREQYLFSYNKSYGNREVEFENDSL
Ga0206128_10220486F007770N/AMSGEGLSVSFRRTQETKKSNQELLEKFQKIIYSSRVMKHMKWYGEAESVYLEEHGDEELTSWQRDGVAIKDTFQLCISGGKSWYKDADLYESHEVEDSFVSLARRFANDNALMYFPDGFPAEWIEQEIIDGEKNWNHFNVKPDDKNIDKICHVWYRYGIMKLQAFDEKVESQLWQDAKTEIKQLMEHEYAR
Ga0206128_10220488F039679AGAAGGMSAKNSHLTIRSDLLEEDADISVPVRFLDYQEDDYVGDSATLNIDCEYSTDGEQLDDMAGYNIIVRITDSSKKDKYNNPWKDRLAFAISADFDWN
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