NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1028698

Scaffold Ga0206128_1028698


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1028698 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2993
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F079213Metagenome116N
F092061Metagenome107Y
F100944Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_102869811F079213AGGAMTTARLYNAAKYQQVEGKKMILELSDGQLFNVKGSREANKICKELNAKPWNF
Ga0206128_10286984F100944GGAGMSTFRIQRTRKAPVSVTQKTRQNTWNAIFQSMGKGHWFLVTKPNYAKVSQAAATHIKGKYSLYKHPTRKDCHVFMIKEK
Ga0206128_10286988F092061GGAGGMNKETAQGIIKFFVESYTAPTEEQRQLAKCPALGACKGLYPEEVRHLEKEAVSRLHFKHWRRKLEEVA
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