NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206128_1059294

Scaffold Ga0206128_1059294


Overview

Basic Information
Taxon OID3300020166 Open in IMG/M
Scaffold IDGa0206128_1059294 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1813
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F072257Metagenome / Metatranscriptome121Y
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0206128_10592942F092077N/AMTEELSPLQRSFDRINELIPHNRDVLLRCSLYEMCVELTNKSFAEGINTKY
Ga0206128_10592943F072257N/AMQELDKVVHQWCDDNDRWMYIEYDRDGKVMGLNFMQGDEYECFKESWCVSDRGLTDFYKQMLYTFAYEQRNVPEHCFINSCMWAYHSAISSRDKYAEPCRRNTHCKR
Ga0206128_10592944F005129N/AMTYKVKIVEVNKSTNLMHHSYIDLGIFTVNATTHSFLFPAVKTDWGADINDTELEFYVNNKRCKYVGFKELYTQLYGNSFVTWEADIIRQIEEEVAKRIVKEYPGTDVNY
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