NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206127_1001652

Scaffold Ga0206127_1001652


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1001652 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23769
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (39.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009493Metagenome317N
F030253Metagenome186Y
F044500Metagenome154N
F094426Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_100165210F009493N/AMRKNKEIVLTLGKVPSLNSFYAGSHWTKRKKAKDAALETIKEQLGYNTGAPYNSFRVTAYVRYRYDLDNSIIATKFTSDALKTLGWIKDDSPKYFRRLLMVWTEQIPKDKAEITIELSDEHPE
Ga0206127_100165216F030253AGTAGMKKAIKKYLRKRRHLRYVNCYLSDIRWEIINTVVAASATEFTYPVNKHLENLGQLVRKYERRSRWLRF
Ga0206127_100165219F094426N/AMYLTNYTADRVKLAYTFAEHLRHNWRVLSDSKKDELLKEITGLLDVRIIEEKYESRIDKIKSDGTYNKALRRAKLGL
Ga0206127_100165229F044500GGAGGMLTLKKKIETIVAELTLRYDSLRKIWQYSDSQPTEITLAAALVTLYPIATYLELGYSPIMQLMAPIAGLYQLYCVSGKCLSCRVRASFVTFSFYLLAGVMYLYCGLLFQGPSYWGWILLAVSSFGSLKRIKKEELHRKNG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.