NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1004509

Scaffold Ga0206127_1004509


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1004509 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12268
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (17.65%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002629Metagenome / Metatranscriptome542Y
F006815Metagenome / Metatranscriptome364Y
F054158Metagenome / Metatranscriptome140N
F076259Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0206127_100450916F076259N/AMSQFEQLGYFLEYMIDDKYIGSTILEKPDRKEVGYYGRIDEVATEDIIFSSKKKIKKGQAFNTRMYPLCGKFIK
Ga0206127_100450918F002629AGCAGMRVNEAAWEKLKKQIEYHTDADPSISDISINYQVKETKNRNYLRLNITIDKWDKITG
Ga0206127_10045096F006815N/AMGTNYSQETAQSIIEQYRFRVEALSNKIEELKAKIEVSQINKQNG
Ga0206127_10045098F054158N/AMRRRIKKPLDDKVKFIPCDENKLIYSYTRTDRKSARFEKLNK
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