NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206127_1008966

Scaffold Ga0206127_1008966


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1008966 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7596
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010834Metagenome / Metatranscriptome298Y
F019312Metagenome / Metatranscriptome230N
F031655Metagenome / Metatranscriptome182Y
F046627Metagenome151N
F063568Metagenome129N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_100896614F031655N/AMNFAIDIAPLAGILIGVNYWNSTMNEDFENPKYHSLQLCFGIFALVVTWSTEQ
Ga0206127_100896617F063568AGAAGMENTKVSKLLLVYLWTQGHKIKEYKEAEGVTTVHGKDEYKFDVSGSYGGFRVEYTHNRFSFYDGDKKLKDTDLNEFR
Ga0206127_100896618F046627N/AMSFVKGDIGEDLWCDYIKKRGHTDIIRAPKMKFYDWDVKSTYQKNELTFEVKYDSKAYWWANRRGTPEQPNLYIEFKNTNKDEDSGIKASKAIYYIYILKRDESNTAFVFEREGMLSHLEQVTYKIVGNSATGDDNALGWIPPLESLVTQPFFVNKIVL
Ga0206127_100896620F019312N/AMTHSKAILQAQIIFEEALSDKECIDQLLHIDAQMYANTGLDTSKAEMESIKRASAFIYRLIKGIDYDKGQRFIQAMGLTR
Ga0206127_10089669F010834N/AMKKELTLSLTLPKTISLNALYAGKHWTFRKKIKDGYKKIVEEELARYDHHIAESMSIHIRYNTRADVDNLVLVSKFTADTLVANEWIADDNPKHYHRLTITYDKSVEKNYCEVEVRLKGATLQE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.