NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0206127_1009085

Scaffold Ga0206127_1009085


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1009085 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7520
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (26.32%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016663Metagenome / Metatranscriptome245N
F073566Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_100908517F073566AGGAMVKNKIEGNMDYSKSIEEIRNKTINLLLEFTDNKNVSNYLRDVDRELERLDSAISREPKVGWVAIDDMMWDMLKEDTNLTRVCVEFKVRKEKDYLHANKRNININLVD
Ga0206127_10090853F016663GAGMAKLRTYNVEAAKQLADKFIQITGLDLTSTSRYQEQAYFRALFYKVMCDINGMNDRMISEWFEDIGVKRNRSSIFHALRKIDVYYESFVRFRNVYDLFFDDRKKERERIENKKSERVRIINERIDRKLDASDRNKIHELADVIPEDRIDEMYEMMTLRMKSWAWKSKDKCEVIQSSTSMDGMCW
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.