NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206127_1076588

Scaffold Ga0206127_1076588


Overview

Basic Information
Taxon OID3300020169 Open in IMG/M
Scaffold IDGa0206127_1076588 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160419_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1519
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016663Metagenome / Metatranscriptome245N
F062669Metagenome / Metatranscriptome130N
F104955Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0206127_10765882F104955GGAGMPFNKDVSDHFYELGLDLLFLGYTRKDVELWIEKAEEDECYEECDGLLRALNYKSDVDDDYYYGEEEEDFI
Ga0206127_10765883F062669GAGMIITMAKKKKTSFNYYKTNNNAQSHCFNKGYVIYPEAFEGGWRVSIELGHRKHTYPEVMSLIEAYVKIWKEYEKIQNRDNNGKN
Ga0206127_10765884F016663AGAAGMSRYGKNTKKYKIEITMGKIRTYNVEAAQQLADKFVEITEIDLTSTSRHQEEAYFRALFYKIMVDINGMNDRMVSDWFQDIGVKRNRSSIFHALKKIDIYYESYVRFRNVYDLFFDDKKKERERIEDKKSERIRIINERIDRKLEAGERNKIHELADVIPEDRIDEMYEMMNLRIKSWNWKSKDKCEIIDSSTSMEGMHW
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