NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179594_10005676

Scaffold Ga0179594_10005676


Overview

Basic Information
Taxon OID3300020170 Open in IMG/M
Scaffold IDGa0179594_10005676 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3203
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000742Metagenome / Metatranscriptome912Y
F011404Metagenome / Metatranscriptome291Y

Sequences

Protein IDFamilyRBSSequence
Ga0179594_100056762F000742GAGMHPREAIFGRTVGRRGLALLASVALLYFAAGGSLFHQHTSGPDTACHVCQVLHMPALAAARLDLVIAPQIITRHSSLPQHAAPSDSFSLHRAGRAPPTA
Ga0179594_100056763F011404AGGAMVFLTPQPFLPKLRLSKHMQAKYHRNRILALLLGVFFLGAQFHFCTDLTTTPSASHICPVCSTTGSIVAAQSANFAFVPVTNRLEIAPLVVLVSSAVPRATSPRAPPAR
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Institute for Fundamental Biomedical Research
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