NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180732_1000676

Scaffold Ga0180732_1000676


Overview

Basic Information
Taxon OID3300020171 Open in IMG/M
Scaffold IDGa0180732_1000676 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26458
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (93.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameFinland: Olkiluoto Island
CoordinatesLat. (o)61.2413Long. (o)21.4947Alt. (m)Depth (m)420
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039194Metagenome164Y
F046170Metagenome / Metatranscriptome151Y
F071959Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0180732_100067618F046170AGGAGGMIRIEDFGEIAYGGAVTLAEWWDNKRIADGKITNKDIFKKASFYTYLGVGLAATLISVFGWMKRWERWSEHVSHGFLYDLPRFAYNLSTSMGAAGRGGAGSAAVQEAQRILRERPVVARQLAEGRATQRSYQPEMEQAIAF
Ga0180732_100067619F071959AGGAGGMASRNYLVMSNDMTLSDKKEYRLNALAAGLERCGLKGIGDIKADVNGLATIPDANKATRVKLIHDFIATGQWPRSIDQRELAPLTDLVVPTALDMWLTAALAVVGTPYSCFQAVAAPQLIVGRLMVCYAVSVESAVVPMPVSRLLFRRGGAAGNIQAQFDMEPMGSRLEPDAFLSEPVVIDPNDVFAIQVICRAVAAATIVHIHNFLFESSGLVIA
Ga0180732_100067622F039194AGGAGGMPDLYIFKAQVGMFDPVALQNHNVRIHYVQATYYRKVDFLEGIPPFQCVNLGALAAVTPSGRVNIVNLEMADNEFGLWRWYPIDDAQIRLYHPAGIAKYQLRNLQVPVDINILFRDPNLVSTEIAVWQNNRPAAEAVNGHAFALGAVRLIAIGYRFHTVDLESGKDADPELVNAIKTGKSPCTDVWCSGRGIGD
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