Basic Information | |
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Taxon OID | 3300020171 Open in IMG/M |
Scaffold ID | Ga0180732_1000676 Open in IMG/M |
Source Dataset Name | Groundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 26458 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 42 (93.33%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe |
Source Dataset Sampling Location | ||||||||
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Location Name | Finland: Olkiluoto Island | |||||||
Coordinates | Lat. (o) | 61.2413 | Long. (o) | 21.4947 | Alt. (m) | Depth (m) | 420 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F039194 | Metagenome | 164 | Y |
F046170 | Metagenome / Metatranscriptome | 151 | Y |
F071959 | Metagenome / Metatranscriptome | 121 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0180732_100067618 | F046170 | AGGAGG | MIRIEDFGEIAYGGAVTLAEWWDNKRIADGKITNKDIFKKASFYTYLGVGLAATLISVFGWMKRWERWSEHVSHGFLYDLPRFAYNLSTSMGAAGRGGAGSAAVQEAQRILRERPVVARQLAEGRATQRSYQPEMEQAIAF |
Ga0180732_100067619 | F071959 | AGGAGG | MASRNYLVMSNDMTLSDKKEYRLNALAAGLERCGLKGIGDIKADVNGLATIPDANKATRVKLIHDFIATGQWPRSIDQRELAPLTDLVVPTALDMWLTAALAVVGTPYSCFQAVAAPQLIVGRLMVCYAVSVESAVVPMPVSRLLFRRGGAAGNIQAQFDMEPMGSRLEPDAFLSEPVVIDPNDVFAIQVICRAVAAATIVHIHNFLFESSGLVIA |
Ga0180732_100067622 | F039194 | AGGAGG | MPDLYIFKAQVGMFDPVALQNHNVRIHYVQATYYRKVDFLEGIPPFQCVNLGALAAVTPSGRVNIVNLEMADNEFGLWRWYPIDDAQIRLYHPAGIAKYQLRNLQVPVDINILFRDPNLVSTEIAVWQNNRPAAEAVNGHAFALGAVRLIAIGYRFHTVDLESGKDADPELVNAIKTGKSPCTDVWCSGRGIGD |
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