NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180732_1000871

Scaffold Ga0180732_1000871


Overview

Basic Information
Taxon OID3300020171 Open in IMG/M
Scaffold IDGa0180732_1000871 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21555
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (92.31%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameFinland: Olkiluoto Island
CoordinatesLat. (o)61.2413Long. (o)21.4947Alt. (m)Depth (m)420
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039194Metagenome164Y
F046170Metagenome / Metatranscriptome151Y
F071959Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0180732_10008713F046170AGGAGGMIRIEDFGEIAYGGVVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMKRYERWSEHVSHGFLYDLPRFAYNLTKAMGTSGRRGSESAAVQEAQKILRERMSARALTQGSGIPAQRTYVPEMEQVGAF
Ga0180732_10008714F071959AGGAGGMASRNYLVMSNDMTLTDKKEYRTKALAAGLERCGLKSIGDINADVPGLQTIPVANKSARVAAIKAYIETGAWPRTIDQRELAPLTDLVVPTALDMWLTAALAVVGTAYSCFQAVVAPQLIVGRLMVCYAVSVESAVVPMPVSRLIFRRGGAAGNIQAQLDMEPMGVRWEPDAFFSEPVVIDPNDVFAIQVLCRAVAAATIVHIHNFLFEGAGQVVA
Ga0180732_10008716F039194AGGAGGMPDLYIFKTQVGMFDPVALQNHNVCIHYVQKSYYRKVDFLEAIPPFQCINLGALPALTPSGRANIVNLEMADNEFGLWRWYPIDDAQIRLYHPAGIAKYQLRNLQIPVDMNILFRDPNLVSTEIAVWENNRPAVEAVNGHAFGLGGVRLISLGYRFHTANLESGAEADPELVKALKAGKEPCTHVWCSGRGIGD
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