NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0180732_1001185

Scaffold Ga0180732_1001185


Overview

Basic Information
Taxon OID3300020171 Open in IMG/M
Scaffold IDGa0180732_1001185 Open in IMG/M
Source Dataset NameGroundwater microbial communities from the Olkiluoto Island deep subsurface site, Finland - KR11_0.1 MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17080
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (92.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater → Groundwater Microbial Communities From Three Deep Subsurface Sites In Europe

Source Dataset Sampling Location
Location NameFinland: Olkiluoto Island
CoordinatesLat. (o)61.2413Long. (o)21.4947Alt. (m)Depth (m)420
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046735Metagenome / Metatranscriptome151Y
F056958Metagenome / Metatranscriptome137Y
F068209Metagenome125Y
F079599Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0180732_100118515F079599GGAMGFETLKNIIDFNKEQTELHPIDEDLENNLCPYDDWPLNENSEGYKSCLICGRIWRI
Ga0180732_100118517F046735AGGAGMLLNVFERLLLRNIVPQIQGWNYAHMKEARELMEGLFTEQEETDLQFEQEGTQVKWKIKKEDGSDIPQERDIPVSDGLKAKIGKFLRQLDKEERLGMEHMTLYEKIVEPAP
Ga0180732_10011854F056958AGGAGMENEVNILVEEKPKSIKLADGKEYKLPPIDMTTLANIEKTMGFGLGRLQTKLENETMTTMRSLIYALLKEEQPNLDIDKVGHLITLKEMSSISSTISEIMALS
Ga0180732_10011855F068209AGGTGGVNTEAICYLLRKTSLTRSEIGKLKPDQLNAIIKEVYFQESVDEYRKMHSVASILAAIYNTIPQKPGHKALTAKDFLSGEPPTREGKRPDTNVEILAKQKGIILPSK
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