Scaffold Ga0211729_10578889

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211729_10578889

Scaffold Ga0211729_10578889

Overview

Basic Information
Taxon OID	3300020172 Open in IMG/M
Scaffold ID	Ga0211729_10578889 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4399
Total Scaffold Genes	13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (92.31%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	0 to 20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F064658	Metagenome	128	Y
F067664	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211729_1057888911	F067664	AGG	MKINYDEFDEMDTLPRRETIRTSQKPVGSLTDNRRKVKPQRDGAHKRMMEWQRD
Ga0211729_1057888912	F064658	GGAG	VINILFGKRNSYSDMVRDFNEGNIPHETLPSEPTAEHSVLGPDANLPLIVKELAPIQLDNIRKEREKLQKRLQEMAVYEATLTALLDIVK

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