NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11119196

Scaffold Ga0211729_11119196


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11119196 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1258
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F008688Metagenome / Metatranscriptome329N
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_111191962F007859GAGMKNLLIILLLCTSCASGMYLRYSYNRALQNLPLCSKVHAINNDYITYSMIEPSTNSVYVIHTNYYRAYYTTDGKISKTTPNK
Ga0211729_111191963F008688N/AMNRFNKIVLGSLAAILLTAMTIEPPKIKVYLIMSYRGNDLSIEKVYLKKENAQKYCDMYKDSHNYSVEERELTE
Ga0211729_111191964F013524N/AMKTKQVVDNLREFTQKNCNTTLDPKLCEDIRYLCDEVERFSKEIAKANDHMDEDHITIQRYKNKLEKCQSKLDQYEPF
Ga0211729_111191965F009135N/AMSKPKYYLKVNLPANFDDLDAEVIKKDLITYINSRNQYGALYGPKSSKKGIVVEKIIYSANED
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