NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211729_11202103

Scaffold Ga0211729_11202103


Overview

Basic Information
Taxon OID3300020172 Open in IMG/M
Scaffold IDGa0211729_11202103 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20267
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001713Metagenome648Y
F002487Metagenome / Metatranscriptome554Y
F007203Metagenome / Metatranscriptome356Y

Sequences

Protein IDFamilyRBSSequence
Ga0211729_1120210313F001713AGGAMKYEFDTTTGEGSVIVTVVMTYERDEEGTYNENIDEVWFEGRNVMGIFTDAQFKELEMEGTMKLTSHLLAESDHAKIIAYE
Ga0211729_112021032F007203GGAMYVQMQGVNLAPKVKELENRLEMLENVVKELQSSSRPKLGRPPKDAHGNERLEVDTTGRN
Ga0211729_1120210321F002487N/AMTREDAIQDLQGTYCCYCTNPKTYGSCCGENHFVPFEDLYEEDKEAMIEEYLTEGN
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