NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206124_10028791

Scaffold Ga0206124_10028791


Overview

Basic Information
Taxon OID3300020175 Open in IMG/M
Scaffold IDGa0206124_10028791 Open in IMG/M
Source Dataset NamePelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160321_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2622
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium TMED194(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameAtlantic Ocean: North Sea, Helgoland
CoordinatesLat. (o)54.1841Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F047686Metagenome / Metatranscriptome149Y
F059044Metagenome / Metatranscriptome134Y
F061772Metagenome / Metatranscriptome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0206124_100287912F047686AGGAGVNKAAFLIMSLFSLKISSLDLTYNPPLDPYFCDNNPELCKNLEIKNYPVFDMTPRATNGQWIAFWTFQILDVYSTSRALKYDCVKEINPLYTERPSDFRIVVTKSFLILPGLLYDDYWKEVTPNELNNTNMIYSVVVANNFRLLKQAKQECRKIR
Ga0206124_100287914F061772GAGMAVLGVHLVALGWLFPHVLMFIVVPPAIFYLLFLWCELVYEVEVGHRQRLIKAIREADNQITKDVLTWELMLHEEHSIFGNSSNDRL
Ga0206124_100287916F059044N/AMKHMIKWLKITAGINLYLSVVMTFVFLTLLFAIVSDYNLTNADEYVRFLIKEELKNPGDQ
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