NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181556_1163532

Scaffold Ga0181556_1163532


Overview

Basic Information
Taxon OID3300020176 Open in IMG/M
Scaffold IDGa0181556_1163532 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011505AT metaG (spades assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)896
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025491Metagenome201N
F028499Metagenome191N

Sequences

Protein IDFamilyRBSSequence
Ga0181556_11635321F025491N/ATIRQVLGEYRNAEGHRGRYQQNQRRLQGVLDFDLDSADAWEDAPSTATFSVYAKDSSGDMADTGRNVVVTNRALFLTYTAGTYCKIEWIDGEWQIYAADCTG
Ga0181556_11635322F028499N/AMQAGHCCQCKGGERAVTLKGLQASDGVTQWEWGPGWKAARVYGSTDFVALTHDNTTGNNVAATVSGNRFRADYNGASDSYDNNSRRGVTIADIDGTAGTDTTTAVDWILDIYSPDYPQSVNLFGGGDSAGLSGGEMAINGHVAPAVEFVTKTNLTTTATKVYEFLPHTQQAGDIYLKTARGFGVSLSLQSTITV
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