NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10000089

Scaffold Ga0194134_10000089


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10000089 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)128602
Total Scaffold Genes168 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)135 (80.36%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067701Metagenome / Metatranscriptome125N
F079965Metagenome / Metatranscriptome115N
F097202Metagenome104Y
F099178Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000008910F097202N/AMKYLIALLFSVTTVFAVENDSVICFKKTDVVKMANRIQLIRDSVEYLTAVVNAQDTLIEFHQTRFDLYHQQLKNRDQAIDACKKRSVELEKIIDELQPRWYDNKLLWFFTGVGTTLGIVFAVQ
Ga0194134_10000089107F099178GAGGMNYPKHRLGKDVVVRLAPQVGVMECEFRHLLKAFGQPTFSTESGDEFDGIEKVAWHIEFETGHVAKISDVRPFGLHEMDTRTVKEWKVNAHDEKVYEWIKEKIRDANPMG
Ga0194134_10000089127F079965GAGGMLDTLKTFIPLLVLSVIAIGATFGDGNFSTFAVGLSKYALAVGAAWFVDSYLIKEVRTREILAENPIAYAIWLFANIVTAALCFSNS
Ga0194134_1000008925F067701N/AMETQIQYIDIISLAVSSIATLLGVFLSWFLKYKYGEYKQKRIDREISHAKLIQTILDQLLEEYKCQRAFILQRHNGGKYKTGKSMTKLSTSFESLEEGVSTEFKQYQNLPISLYSNFVEDVVNHKAVYPVVDNIEDLITKAFFSQRGSKSAVVYPIRKGSEFIAIVGFEWTHKVEKLDNILSEIEADVKSMGETLSKLL
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