NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10000312

Scaffold Ga0194134_10000312


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10000312 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)74495
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)55 (70.51%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004727Metagenome / Metatranscriptome426Y
F060853Metagenome / Metatranscriptome132N
F090468Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000031225F090468AGGAMKLVEFIYTKDVGEVSKRAVIEVITPSKFIEGWDITNLDEENAAVFMQQMSELRRVQYEQTMSLITEFDLKHSYRRFKPENMSDVKVEYV
Ga0194134_1000031235F004727GAGMKVTITYHDNESFTVEEIVKQATHNYGRTAQVEIMPESTLAYDHIYFGLQQLITHEQLSILFEENNKYQQDIRKLREEVIYKITEIIDQVIIDNESKVG
Ga0194134_100003128F060853GGAMAVQQLLDNLYLKPAPWRKCWQTREEVISDWHSGKDFRIENGPYCSIRDIEYLYSSYNRVYILYSHGTIEV
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