NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10000498

Scaffold Ga0194134_10000498


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10000498 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59966
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)72 (93.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002343Metagenome / Metatranscriptome568Y
F006344Metagenome375Y
F010158Metagenome307Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_100004981F002343AGGAGMSDVELKLSLEEAVAITNLIGSLPTSQGAWPLFEKLKAQVEPHLPKSEEVSKQ
Ga0194134_1000049813F010158GGAMTETRLQEPEWVFPFDGMEVGDSFFVPTVKPAEMLYKLDTCAKIAKVRVKAYASSKDGHLGVRVWRIG
Ga0194134_1000049824F006344GGAGGVEIEDDILDLIRALPNEINDTSTTTEMKFLTVGGVLWACHDEIQRLREEVARLKKGSKKK
Ga0194134_1000049875F002343AGGAGMSDVELKLSLEEAVAIVNLIGSLPTSQGAWPLFEKLKAQVEPHLPKSEEVSKQ
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