NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10002480

Scaffold Ga0194134_10002480


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10002480 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21762
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (65.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055822Metagenome / Metatranscriptome138Y
F090468Metagenome / Metatranscriptome108Y
F091922Metagenome / Metatranscriptome107Y
F095362Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000248033F055822AGGAGMAGYTREFLIDAYLWRFTKIPSISIEQLLDLERIANKTYDTYGKDKFRDYSSLDAEYIRNYKADIK
Ga0194134_1000248037F091922GGAGGMSKIVNYTAELENLIANTLLPVYEDYCRRYPFSPLAKEISYDVIREIKYVKDCGALLKPRKNLA
Ga0194134_100024804F090468AGGMKLLEFTYTKQTGDVSKRAVIELVTPTTFVEGWDVTNLDNNEFARFTETMGSLRRRQHEETMQLLQDFDLKHNYRRFKPDSMTDIQIEYV
Ga0194134_1000248051F095362GGAGVNIPVQKKFIEWFYHKPFPSYDSKRNRNGFLGEMLDMDKVDRSTLQYWVQEAFHKGAEAQRELDSEK
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