NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10002906

Scaffold Ga0194134_10002906


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10002906 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19309
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (55.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F003889Metagenome463Y
F082558Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000290611F001190N/AMSNTDTYFNINQFEQLLQRLEASKGRQQTQKSVEGRRDIFAQGLASMMSNF
Ga0194134_1000290612F001190AGGMSNTDTYFNINQFEQLLERLEASKGRQQTQKSVEGRRDIFAQGLASMMSNF
Ga0194134_1000290617F003889N/ALNLELRKSIFVVGPEYLAIGITAIVSAVTGGSWVANKLLERQVERLQQAFDYIGSQKRRIDILEDQINRMPLDYVLKADFLREIKEMHDNFRQINDKLDKLMEKLLLK
Ga0194134_1000290622F082558AGGAGMKTKKLVKNALKHPELYSPAELIFFSKWLHQKKQTKAAKINKDKKENS
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