NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194134_10002926

Scaffold Ga0194134_10002926


Overview

Basic Information
Taxon OID3300020179 Open in IMG/M
Scaffold IDGa0194134_10002926 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19208
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (19.35%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8915Long. (o)29.586Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016038Metagenome / Metatranscriptome250Y
F052418Metagenome142Y
F065460Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0194134_1000292616F065460N/AMANFNDKYEELLESFKSIKTIKREFYPKNFKLSEEFVKAFKNEYGRLVKEGHHPRKALARINKALLFHAS
Ga0194134_1000292627F016038N/AMPLNIDVLPVQKSLIDLAELPKNSFNSVFYGYNLKSLLDDVLLVKFADETEDGTSIVRNGIVVPINVDTKAWRIGEIILAGPNAKHTKPGDFVCFPNNLGIPVANIDIDGYGTLKKGIFLNEQRIFGVCSVRKDNESVASHIKKSSSNQRSRN
Ga0194134_1000292628F052418N/AMKVSLATLKNLLLTNVAEIKFLRRRSKPGTPPTRRMLCTNSLQLLMSPEGRLALNYRRAINMPKFNPDAKNLIITWDIFMQDYRCINVATCDLINVIPANKTFWNFFNQRLALLSTNEKVRFMNT
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